Lattice points, contingency tables, and sampling

Yuguo Chen, Ian Dinwoodie, Adrian Dobra and Mark Huber

Duke University

April 2004

Markov chains and sequential importance sampling (SIS) are described as two leading sampling methods for Monte Carlo computations in exact conditional inference on discrete data in contingency tables. Examples are explained from genotype data analysis, graphical models, and logistic regression. A new Markov chain and implementation of SIS are described for logistic regression.

Keywords: Contingency table, Markov chain, Gröbner basis, toric ideal


The manuscript is available in PostScript and PDF formats.